Uses of Class
at.tuwien.ifs.somtoolbox.SOMToolboxException

Packages that use SOMToolboxException
at.tuwien.ifs.commons.gui.jsap This package contains a GenericGUI for JSAP with all required (helper) classes 
at.tuwien.ifs.feature.evaluation   
at.tuwien.ifs.somtoolbox.apps Classes in this package implement applications based upon SOMs, the most important being the SOMViewer
at.tuwien.ifs.somtoolbox.apps.analysis   
at.tuwien.ifs.somtoolbox.apps.helper   
at.tuwien.ifs.somtoolbox.apps.metricEval   
at.tuwien.ifs.somtoolbox.apps.server Server side application of the SOM - provides servlets for a web-client access. 
at.tuwien.ifs.somtoolbox.apps.viewer This package implements the SOMViewer application; main class is SOMViewer.java. 
at.tuwien.ifs.somtoolbox.apps.viewer.fileutils   
at.tuwien.ifs.somtoolbox.clustering   
at.tuwien.ifs.somtoolbox.data Classes in this package implement reading, storing and providing of different data needed for the SOM, e.g. 
at.tuwien.ifs.somtoolbox.data.distance   
at.tuwien.ifs.somtoolbox.input Provides classes responsible for reading trained network models from file or some other location. 
at.tuwien.ifs.somtoolbox.layers Provides the basic classes constituting SOM-based neural networks. 
at.tuwien.ifs.somtoolbox.layers.metrics This package contains the metrics used for distance calculation during training and for mapping data onto maps. 
at.tuwien.ifs.somtoolbox.layers.quality Classes in this package implement various quality measures, indicating the quality of the SOM mapping. 
at.tuwien.ifs.somtoolbox.models Provides the actual implementations of network models. 
at.tuwien.ifs.somtoolbox.output Provides classes to write trained SOMs to files for future re-use. 
at.tuwien.ifs.somtoolbox.properties Provides classes that handle reading network-specific properties for the training and properties specific to the state of applications. 
at.tuwien.ifs.somtoolbox.util Provides various helper classes. 
at.tuwien.ifs.somtoolbox.visualization Provides classes creating visualisations of trained SOMs. 
at.tuwien.ifs.somtoolbox.visualization.clustering Contains classes implementing clustering methods on the SOM. 
at.tuwien.ifs.somtoolbox.visualization.comparison   
at.tuwien.ifs.somtoolbox.visualization.contourplot   
 

Uses of SOMToolboxException in at.tuwien.ifs.commons.gui.jsap
 

Methods in at.tuwien.ifs.commons.gui.jsap that throw SOMToolboxException
static ParameterControl ParameterControl.createParameterControl(com.martiansoftware.jsap.Parameter param, com.martiansoftware.jsap.JSAPResult result)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.feature.evaluation
 

Methods in at.tuwien.ifs.feature.evaluation that throw SOMToolboxException
static void SimilarityRetrieval.main(String[] args)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.apps
 

Methods in at.tuwien.ifs.somtoolbox.apps that throw SOMToolboxException
static void MergedSOMDataMapper.main(String[] args)
           
 

Constructors in at.tuwien.ifs.somtoolbox.apps that throw SOMToolboxException
MergedSOMDataMapper(String[] args)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.apps.analysis
 

Methods in at.tuwien.ifs.somtoolbox.apps.analysis that throw SOMToolboxException
static void FeatureDistributionAnalysis.main(String[] args)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.apps.helper
 

Methods in at.tuwien.ifs.somtoolbox.apps.helper that throw SOMToolboxException
static void DataMapper.main(String[] args)
           
static void VectorSimilarityWriter.main(String[] args)
           
static void ClassInfoFileCleaner.main(String[] args)
           
 

Constructors in at.tuwien.ifs.somtoolbox.apps.helper that throw SOMToolboxException
DataMapper(String[] args)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.apps.metricEval
 

Methods in at.tuwien.ifs.somtoolbox.apps.metricEval that throw SOMToolboxException
static void MetricEvaluation.main(String[] args)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.apps.server
 

Methods in at.tuwien.ifs.somtoolbox.apps.server that throw SOMToolboxException
static void LabelImageCreator.main(String[] args)
           
 void LabelImageCreator.writeImages(String labelFileName, String outputDirectory)
          Creates and writes the label images.
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.apps.viewer
 

Methods in at.tuwien.ifs.somtoolbox.apps.viewer that throw SOMToolboxException
 boolean MapPNode.changePalette(Palette palette)
           
private  ComponentPlaneClusteringFrame.ComponentPlaneClustering ComponentPlaneClusteringFrame.createClusteredPane(SOMViewer parent, SOMLibTemplateVector tv, GrowingLayer layer)
           
private  void ComponentPlaneClusteringFrame.createComponentImage(ComponentPlanesVisualizer visualizer, edu.umd.cs.piccolo.PNode componentImages, int componentIndex, int xPos, int yPos, boolean showComponentNames)
           
private  edu.umd.cs.piccolo.PNode ComponentPlaneClusteringFrame.createUnclusteredPane(SOMViewer parent, SOMLibTemplateVector tv, GrowingLayer layer, boolean showComponentNames)
           
private  void TuxRacerExportDialog.exportTuxMap(File toDir, String mapName, int unitSize, boolean copyAudioFiles)
           
private  BufferedImage MapPNode.getVisualisation()
          Gets the visualisation variant from the current MapPNode.currentVisualization obtaining the values from MapPNode.currentVisualizationVariant, MapPNode.getScaledBackgroundImageWidth() and MapPNode.getScaledBackgroundImageHeight().
 edu.umd.cs.piccolo.PNode ComponentPlaneClusteringFrame.makeComponentPNode(ComponentPlanesVisualizer visualizer, GrowingSOM cpsom)
           
 boolean MapPNode.reloadPaletteAfterEditing(Palette palette)
          Reloads the given palette after it has been edited with the PaletteEditor, i.e.
 boolean MapPNode.reversePalette()
           
private  void TuxRacerExportDialog.saveElevationFile(File mapDir, int unitSize)
           
private  void TuxRacerExportDialog.saveTerrainFile(File mapDir, int unitSize)
           
private  void TuxRacerExportDialog.saveVisualisaton(File filename, int unitSize, String visName)
           
 boolean SOMPane.setInitialVisualization(BackgroundImageVisualizer vis, int variant)
           
 boolean MapPNode.setInitialVisualizationOnStartup(BackgroundImageVisualizer vis, int variant)
          Method to be used for setting the initial visualisation on startup - does not actually create the image, just sets the MapPNode.currentVisualization and MapPNode.currentVisualizationVariant.
 boolean MapPNode.setVisualization(BackgroundImageVisualizer vis, int variant)
           
 boolean SOMPane.setVisualization(BackgroundImageVisualizer vis, int variant)
           
 boolean MapPNode.setVisualization(int vis, int variant)
           
 boolean SOMPane.setVisualization(int vis, int variant)
           
 void SOMPane.updateSOMComparison()
          Is called when the comparison object for comparison between two SOMs must be changed.
 

Constructors in at.tuwien.ifs.somtoolbox.apps.viewer that throw SOMToolboxException
ComponentPlaneClusteringFrame(SOMViewer somViewer, GrowingSOM orginalSom, SOMLibTemplateVector tv)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.apps.viewer.fileutils
 

Methods in at.tuwien.ifs.somtoolbox.apps.viewer.fileutils that throw SOMToolboxException
static BufferedImage ExportUtils.getVisualization(AbstractBackgroundImageVisualizer abiv, int currentVariant, GrowingSOM gsom, int unitWidth)
           
static BufferedImage ExportUtils.getVisualization(CommonSOMViewerStateData state, int unitWidth)
           
 void ExportUtils.saveImageMap(GrowingLayer layer, int unitWidth, String fullPath, String baseFileName, String[][] visualisations, boolean isAudioSOM, SOMLibClassInformation classInfo, Color[] colors, Properties cleanDataNamesMapping, String inputDataFilesPrefix, String outputDataFilesPrefix, String htmlTemplatesDir, String imageMapTitle, boolean generateRhythmPatterns, boolean forceLinkGeneration)
           
static void ExportUtils.saveMapPaneAsImage(GenericPNodeScrollPane mapPane, String imagePath, boolean autoCrop)
           
static void ExportUtils.saveRhythmPatternsOfWeightVectors(String basefileName, GrowingLayer layer)
           
static void ExportUtils.saveVisualizationAsImage(CommonSOMViewerStateData state, int unitWidth, String imagePath)
           
static BufferedImage ExportUtils.scaleBackgroundImage(CommonSOMViewerStateData state, int width)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.clustering
 

Methods in at.tuwien.ifs.somtoolbox.clustering that throw SOMToolboxException
 HashMap<Integer,ArrayList<HierarchicalCluster<E>>> WardClustering.getClustersAtLevel()
           
 HashMap<Integer,ArrayList<HierarchicalCluster<E>>> HierarchicalClusteringAlgorithm.getClustersAtLevel()
          Returns the clusters at all levels
 ArrayList<HierarchicalCluster<E>> WardClustering.getClustersAtLevel(int num)
          Returns the clustering at a certain level, where the level equals the number of clusters
 ArrayList<HierarchicalCluster<E>> HierarchicalClusteringAlgorithm.getClustersAtLevel(int num)
          Returns the cluster at a certain level, where the level equals the number of clusters
 ArrayList<HierarchicalCluster<E>> WardClustering.getClustersByRelativeThreshold(double percent)
          Returns the clustering at a certain level indicated by the relative merge cost for that level, compared to the costs of merging all data items
 ArrayList<HierarchicalCluster<E>> WardClustering.getClustersByThreshold(double threshold)
          Returns the clustering at a certain level indicated by the merge cost for that level
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.data
 

Subclasses of SOMToolboxException in at.tuwien.ifs.somtoolbox.data
 class ClassInfoHeaderNotFoundException
          Is thrown if an error occurs when reading properties from file.
 class DataDimensionException
          Is thrown if data dimensions are erroneous.
 

Methods in at.tuwien.ifs.somtoolbox.data that throw SOMToolboxException
static String InputDataFactory.detectInputFormatFromExtension(String inputFileName, String type)
           
 double[][] AbstractSOMLibSparseInputData.getData(String className)
           
 double[][] InputData.getData(String className)
          Returns the vectors of all inputs associated with the given class name
 boolean SOMVisualisationData.loadFromFile(JFileChooser fileChooser, Frame parentFrame)
           
static void InputDataFileFormatConverter.main(String[] args)
           
static void SOMLibClassInformation.main(String[] args)
          Method for stand-alone execution to convert a file to the SOMLibClassInformation format.
static void SharedSOMVisualisationData.main(String[] args)
           
static InputData InputDataFactory.open(String formatName, String inputFileName)
           
 void SOMVisualisationData.readFromFile(String fileName)
           
private  void SOMLibClassInformation.readSimple()
           
protected  void SOMLibClassInformation.readSOMLibClassInformationFile()
          Reads a class information file containing a header and class indices.
private  void SOMLibRegressInformation.readSOMLibRegressionInformationFile()
          Reads a regression information file containing a header and class indices.
private  void SOMLibClassInformation.readTabSepClassInformationFile()
          Reads a class information file containing no header, and tab-separated String entries for the input vector and class labels.
private  void SOMLibRegressInformation.readTabSepRegressionInformationFile()
           
static void InputDataWriter.write(String fName, InputData data, String outputFormat, boolean tabSeparatedClassFile, boolean skipInstanceNames, boolean skipInputsWithoutClass)
           
static void InputDataWriter.writeAsWekaARFF(InputData data, String fileName, boolean writeInstanceNames, boolean skipInputsWithoutClass)
          Writes the data to Weka ARFF format.
 

Constructors in at.tuwien.ifs.somtoolbox.data that throw SOMToolboxException
DataBaseSOMLibSparseInputData(MySQLConnector dbConnector, boolean sparse, String classInfoFileName, boolean norm, int numCacheBlocks, long seed)
           
ESOMClassInformation(String classInformationFileName)
           
SOMLibClassInformation(String classInformationFileName)
          Creates a new class information object by trying to read the given file in both the versions with a file header ( SOMLibClassInformation.readSOMLibClassInformationFile()) and the tab-separated file (SOMLibClassInformation.readTabSepClassInformationFile() ).
SOMLibDataInformation(String fileName)
           
SOMLibRegressInformation(String regressionInformationFileName)
          Creates a new class information object by trying to read the given file in both the versions with a file header ( SOMLibRegressInformation.readSOMLibRegressionInformationFile()) and the tab separated file ( SOMLibClassInformation.readTabSepClassInformationFile()).
SOMLibSparseInputData(String vectorFileName, String templateFileName, String classInfoFileName)
           
SOMLibSparseInputData(String vectorFileName, String templateFileName, String classInfoFileName, boolean sparse, boolean norm, int numCacheBlocks, long seed)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.data.distance
 

Methods in at.tuwien.ifs.somtoolbox.data.distance that throw SOMToolboxException
static InputVectorDistanceMatrix InputVectorDistanceMatrix.initFromFile(String fileName)
          Factory method that reads and creates an InputVectorDistanceMatrix from the given file.
static void DistanceMatrixWriter.main(String[] args)
           
 

Constructors in at.tuwien.ifs.somtoolbox.data.distance that throw SOMToolboxException
AbstractMemoryInputVectorDistanceMatrix(String fileName)
          Reads the distance matrix from an ASCII file, and stores it in memory.
FullMemoryInputVectorDistanceMatrix(String fileName)
           
LeightWeightMemoryInputVectorDistanceMatrix(String fileName)
           
RandomAccessFileInputVectorDistanceMatrix(String fileName)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.input
 

Subclasses of SOMToolboxException in at.tuwien.ifs.somtoolbox.input
 class SOMLibFileFormatException
          Is thrown if the file format of a SOMLib file is corrupt.
 

Methods in at.tuwien.ifs.somtoolbox.input that throw SOMToolboxException
 InputCorrections.InputCorrection InputCorrections.addComputedInputCorrection(Unit source, Unit target, String label, InputCorrections manualCorrections)
           
 InputCorrections.InputCorrection InputCorrections.addManualInputCorrection(Unit source, Unit target, String label)
           
 int SOMLibDataWinnerMapping.getVectPos(String label)
          Finds the position of input vector by comparing its label.
static void MapFileFormatConverter.main(String[] args)
           
 void InputCorrections.readFromFile(String fileName, Layer layer, InputData data)
           
 void SOMLibMapDescription.setProperty(String propertyName, boolean value)
           
 void SOMLibMapDescription.setProperty(String propertyName, Date value)
           
 void SOMLibMapDescription.setProperty(String propertyName, double value)
           
 void SOMLibMapDescription.setProperty(String propertyName, double[] value)
           
 void SOMLibMapDescription.setProperty(String propertyName, int value)
           
 void SOMLibMapDescription.setProperty(String propertyName, long value)
           
 void SOMLibMapDescription.setProperty(String propertyName, String value)
           
private  void SOMLibMapDescription.setProperty(String propertyName, String value, String[] validPropertyNames, Class<?> type)
           
 void InputCorrections.writeToFile(File outputFile)
           
 

Constructors in at.tuwien.ifs.somtoolbox.input that throw SOMToolboxException
ESOMFormatInputReader(String weightsFile, String bmFile)
           
InputCorrections(String fileName, Layer layer, InputData data)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.layers
 

Subclasses of SOMToolboxException in at.tuwien.ifs.somtoolbox.layers
 class LayerAccessException
          Is thrown if an illegal access to a layer is performed.
 

Methods in at.tuwien.ifs.somtoolbox.layers that throw SOMToolboxException
static void GrowingLayer.checkRotation(int rotation)
           
 InputCorrections GrowingLayer.computeUnitFeatureWeights(InputCorrections corrections, InputData data, Unit.FeatureWeightMode mode)
          Implementation of general weighting as in Nünrberger/Detyniecki, 'Weighted Self-Organizing Maps: Incorporating User Feedback'
 double InputContainer.getMappedInputDistance(String label)
           
 void GrowingLayer.rotate(int rotation)
           
 void Unit.setWeightVector(double[] vector)
          Sets the weight vector of this unit.
 

Constructors in at.tuwien.ifs.somtoolbox.layers that throw SOMToolboxException
AdaptiveCoordinatesVirtualLayer(String fileName)
           
GrowingLayer(int id, Unit su, int xSize, int ySize, int zSize, String metricName, int dim, double[][][][] vectors, long seed)
          Constructor for an already trained layer as specified by 2-dimensional array of d-dimensional weight vectors as argument vectors.
GrowingLayer(int id, Unit su, int xSize, int ySize, String metricName, int dim, double[][][] vectors, long seed)
          Constructor for an already trained layer as specified by 2-dimensional array of d-dimensional weight vectors as argument vectors.
MnemonicGrowingLayer(int id, Unit su, int x, int y, int z, String metricName, int d, double[][][][] vectors, long seed)
           
MnemonicGrowingLayer(int id, Unit su, int x, int y, String metricName, int d, double[][][] vectors, long seed)
           
ToroidLayer(int id, Unit su, int xSize, int ySize, int zSize, String metricName, int dim, double[][][][] vectors, long seed)
           
ToroidLayer(int id, Unit su, int xSize, int ySize, String metricName, int dim, double[][][] vectors, long seed)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.layers.metrics
 

Subclasses of SOMToolboxException in at.tuwien.ifs.somtoolbox.layers.metrics
 class MetricException
          Is thrown if vectors with different dimensionalities are subject to mathematical operations.
 

Methods in at.tuwien.ifs.somtoolbox.layers.metrics that throw SOMToolboxException
static DistanceMetric AbstractMetric.instantiateNice(String metricName)
          Same as AbstractMetric.instantiate(String), but tries to get the metric with the specified name, and then with the package prefix, and throwing only a SOMToolboxException with the root cause nested.
 void DistanceMetric.setMetricParams(String metricParamString)
          Sets additional parameters needed for the metric.
 void AbstractMetric.setMetricParams(String metricParamString)
          Empty implementation, subclasses needing to set parameters have to override this class.
 void MissingValueMetricWrapper.setMetricParams(String metricParamString)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.layers.quality
 

Subclasses of SOMToolboxException in at.tuwien.ifs.somtoolbox.layers.quality
 class QualityMeasureNotFoundException
          Is thrown if a quality measure can not be found.
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.models
 

Constructors in at.tuwien.ifs.somtoolbox.models that throw SOMToolboxException
MnemonicSOM(int id, Unit su, SOMInputReader ir)
           
MnemonicSOM(SOMInputReader ir)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.output
 

Methods in at.tuwien.ifs.somtoolbox.output that throw SOMToolboxException
static void ESOMMapOutputter.write(GrowingSOM gsom, InputData data, String dir, String fileName, boolean gzipped)
           
static void SOMPAKMapOutputter.write(GrowingSOM gsom, TemplateVector tv, String dir, String fileName, boolean gzipped)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.properties
 

Subclasses of SOMToolboxException in at.tuwien.ifs.somtoolbox.properties
 class PropertiesException
          Is thrown if an error occurs when reading properties from file.
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.util
 

Methods in at.tuwien.ifs.somtoolbox.util that throw SOMToolboxException
static void FileUtils.copyFile(String source, String destination)
           
static void FileUtils.gunzip(String source)
           
static void FileUtils.saveImageToFile(String fileName, BufferedImage buim)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.visualization
 

Methods in at.tuwien.ifs.somtoolbox.visualization that return SOMToolboxException
protected  SOMToolboxException AbstractBackgroundImageVisualizer.getVariantException(int index, Class<?> klass)
           
 

Methods in at.tuwien.ifs.somtoolbox.visualization that throw SOMToolboxException
private  void ThematicClassMapVisualizer.applyColourWeighting(GrowingSOM gsom, int width, int height, BufferedImage res, Graphics2D g)
           
 void ComparisonVisualizer.calculateMeanVarDistance(GrowingSOM gsom, String[] prefixes, int index, boolean normalized)
           
protected  void SmoothedDataHistograms.ceckInitSmoothingCache(GrowingSOM gsom, boolean forceSmoothingCacheInitialisation)
           
protected  void SmoothedDataHistograms.checkNeededObjectsAvailable(GrowingSOM gsom)
           
protected  void AdaptiveCoordinatesVisualizer.checkNeededObjectsAvailable(GrowingSOM gsom)
           
protected  void AbstractBackgroundImageVisualizer.checkNeededObjectsAvailable(GrowingSOM gsom)
           
protected  void AbstractBackgroundImageVisualizer.checkVariantIndex(int index, Class<?> klass)
           
private  Point2D[][] MetroMapVisualizer.computeFinalComponentLines(GrowingLayer layer)
          Performs the computation of the new bin centres, therefore component aggregation, selection as well as snapping are handled
private  BufferedImage ComponentPlanesVisualizer.createComponentPlaneImage(GrowingSOM gsom, int width, int height)
           
private  BufferedImage MappingDistortionVisualizer.createDistortionImage(GrowingSOM gsom, int width, int height)
           
private  BufferedImage MappingDistortionVisualizer.createDistortionImage2(GrowingSOM gsom, int width, int height)
           
private  BufferedImage GapVisualiser.createGapMatrix(GrowingSOM gsom, int width, int height)
           
protected  BufferedImage AbstractMatrixVisualizer.createImage(GrowingSOM gsom, cern.colt.matrix.DoubleMatrix2D matrix, int width, int height, boolean interpolate)
          Creates an image from a matrix of heights.
private  ArrayList<UnitPair> NeighbourhoodGraph.createKNNBased(GrowingSOM gsom, int width, int height)
          Returns a list of unit-pairs, for which at least one of the two units is one of the k-nearest neighbours of the other one.
protected  BufferedImage MetroMapVisualizer.createMetromapImage(int index, GrowingSOM gsom, int width, int height)
          Will create the metro map image for the given params.
private  BufferedImage UMatrix.createOriginalDMatrix(GrowingSOM gsom, int width, int height)
          Creates an image of the D-Matrix visualisation.
private  BufferedImage UMatrix.createOriginalUMatrix(GrowingSOM gsom, int width, int height)
          Creates an image of the U-Matrix visualisation.
private  BufferedImage MetroMapVisualizer.createOverlayVisualisation(int width, int height)
          Creates the selected overlay visualisation.
private  ArrayList<UnitPair> NeighbourhoodGraph.createRadiusBased(GrowingSOM gsom, int width, int height)
          Returns a list of unit-pairs, for which the distance of at least one of them to the other one is smaller than the fixed radius.
 BufferedImage RegressionVisualiser.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage TopographicErrorVisualizer.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage SmoothedDataHistograms.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage MappingDistortionVisualizer.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage TrustwothinessVisualizer.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage AdaptiveCoordinatesVisualizer.createVisualization(int variantIndex, GrowingSOM gsom, int width, int height)
           
 BufferedImage MetroMapVisualizer.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage SearchResultHistogramVisualizer.createVisualization(int variantIndex, GrowingSOM gsom, int width, int height)
           
 BufferedImage HitHistogramVisualizer.createVisualization(int variantIndex, GrowingSOM gsom, int width, int height)
           
 BufferedImage EntropyVisualizer.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage ThematicClassMapVisualizer.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage TopographicProductVisualizer.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
abstract  BufferedImage AbstractBackgroundImageVisualizer.createVisualization(int variantIndex, GrowingSOM gsom, int width, int height)
          Creates a visualisation image.
 BufferedImage RhythmPatternsAttributeVisualizer.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage SmoothedCountHistograms.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage IntrinsicDistanceVisualizer.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage GapVisualiser.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage NeighbourhoodGraph.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage ComponentPlanesVisualizer.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage ComparisonVisualizer.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage PMatrix.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage FuzzyColourCodingVisualiser.createVisualization(int variantIndex, GrowingSOM gsom, int width, int height)
           
 BufferedImage UMatrix.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage ClusterConnectionsVisualizer.createVisualization(int variantIndex, GrowingSOM gsom, int width, int height)
           
 BufferedImage ActivityHistogram.createVisualization(int index, GrowingSOM gsom, int width, int height)
          Draws the activity histogram.
 BufferedImage FlowBorderlineVisualizer.createVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage MinimumSpanningTreeVisualizer.createVisualization(int variantIndex, GrowingSOM gsom, int width, int height)
           
 BufferedImage CategoryPieChartVisualizer.createVisualization(int variantIndex, GrowingSOM gsom, int width, int height)
           
 BufferedImage ThematicClassMapVisualizer.createVisualization(int index, GrowingSOM gsom, int width, int height, int ClassID)
           
 BufferedImage RegressionVisualiser.createVisualization(int index, GrowingSOM gsom, int width, int height, int blockWidth, int blockHeight, boolean forceSmoothingCacheInitialisation, boolean shallDrawBackground)
           
 BufferedImage SmoothedDataHistograms.createVisualization(int index, GrowingSOM gsom, int width, int height, int blockWidth, int blockHeight, boolean forceSmoothingCacheInitialisation, boolean shallDrawBackground)
           
 BufferedImage ComponentPlanesVisualizer.createVisualization(int index, int plane, GrowingSOM gsom, int width, int height)
           
 BufferedImage AbstractBackgroundImageVisualizer.createVisualization(String variantName, GrowingSOM gsom, int width, int height)
          Creates a visualisation for the given variant name.
private  Point2D[][] MetroMapVisualizer.doAggregation(ArrayList<ComponentLine2D> binCentresAsList, GrowingLayer layer)
          Clustering of metro lines is done in here (i.e.
private  Point2D[][] MetroMapVisualizer.doSelection(Point2D[][] binCentres, GrowingLayer layer)
          Computes the line selection, returns the selected lines
 Point3d[] Snapper3D.doSnapping(double[][] centres)
           
private  Point2D[][] MetroMapVisualizer.doSnapping(Point2D[][] binCentres, GrowingLayer layer)
          Performs the snapping step, returns snapped lines
 Point3d[] Snapper3D.doSnapping(Point3d[] line)
           
protected  void AbstractMatrixVisualizer.drawContour(Graphics2D g, cern.colt.matrix.DoubleMatrix2D matrix, int width, int height, boolean fill)
           
 Color ColorGradient.getColor(double c)
           
 BufferedImage BackgroundImageVisualizer.getVisualization(int variantIndex, GrowingSOM gsom, int width, int height)
          Returns a visualisation image.
 BufferedImage MetroMapVisualizer.getVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage AbstractMatrixVisualizer.getVisualization(int index, GrowingSOM gsom, int width, int height)
          overriding the method in the superclass as we have a different cache key, and to set the min & max matrix values to -1
 BufferedImage SearchResultHistogramVisualizer.getVisualization(int index, GrowingSOM gsom, int width, int height)
           
 BufferedImage AbstractBackgroundImageVisualizer.getVisualization(int index, GrowingSOM gsom, int width, int height)
          Returns the requested visualization image, either by retrieving it from the image cache, or by invoking AbstractBackgroundImageVisualizer.createVisualization(int, GrowingSOM, int, int) to create the image new.
 BufferedImage SmoothedDataHistograms.getVisualization(int index, int smoothingFactor, GrowingSOM gsom, int width, int height)
          Visualisation for a specific smoothing factor
 HashMap<String,BufferedImage> NeighbourhoodGraph.getVisualizationFlavours_K(int index, GrowingSOM gsom, int width, int height)
           
 HashMap<String,BufferedImage> NeighbourhoodGraph.getVisualizationFlavours_R(int index, GrowingSOM gsom, int width, int height)
           
 HashMap<String,BufferedImage> SmoothedDataHistograms.getVisualizationFlavours(int variantIndex, GrowingSOM gsom, int width, int height)
           
 HashMap<String,BufferedImage> BackgroundImageVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height)
          Returns all visualisation flavours of the given variant, e.g.
 HashMap<String,BufferedImage> MetroMapVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height)
           
 HashMap<String,BufferedImage> ThematicClassMapVisualizer.getVisualizationFlavours(int variantIndex, GrowingSOM gsom, int width, int height)
           
 HashMap<String,BufferedImage> AbstractBackgroundImageVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height)
          Default implementation which returns a map of size 1 with the standard, unparameterised visualisation of the given variant.
 HashMap<String,BufferedImage> RhythmPatternsAttributeVisualizer.getVisualizationFlavours(int variantIndex, GrowingSOM gsom, int width, int height)
          Saves all flavours of RP attribute types (#attributeTypes).
 HashMap<String,BufferedImage> NeighbourhoodGraph.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height)
           
 HashMap<String,BufferedImage> ComponentPlanesVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height)
           
 HashMap<String,BufferedImage> ClusterConnectionsVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height)
           
 HashMap<String,BufferedImage> ActivityHistogram.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height)
           
 HashMap<String,BufferedImage> FlowBorderlineVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height)
           
 HashMap<String,BufferedImage> SmoothedDataHistograms.getVisualizationFlavours(int variantIndex, GrowingSOM gsom, int width, int height, int maxFlavours)
           
 HashMap<String,BufferedImage> BackgroundImageVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height, int maxFlavours)
          Returns all visualisation flavours of the given variant just as BackgroundImageVisualizer.getVisualizationFlavours(int, GrowingSOM, int, int), but limiting the number of flavours to the given maximum number.
 HashMap<String,BufferedImage> MetroMapVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height, int maxFlavours)
           
 HashMap<String,BufferedImage> ThematicClassMapVisualizer.getVisualizationFlavours(int variantIndex, GrowingSOM gsom, int width, int height, int maxFlavours)
           
 HashMap<String,BufferedImage> AbstractBackgroundImageVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height, int maxFlavours)
          Default implementation equal to AbstractBackgroundImageVisualizer.getVisualizationFlavours(int, GrowingSOM, int, int).
 HashMap<String,BufferedImage> RhythmPatternsAttributeVisualizer.getVisualizationFlavours(int variantIndex, GrowingSOM gsom, int width, int height, int maxFlavours)
           
 HashMap<String,BufferedImage> NeighbourhoodGraph.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height, int maxFlavours)
           
 HashMap<String,BufferedImage> ComponentPlanesVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height, int maxFlavours)
           
 HashMap<String,BufferedImage> ClusterConnectionsVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height, int maxFlavours)
           
 HashMap<String,BufferedImage> ActivityHistogram.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height, int maxFlavours)
           
 HashMap<String,BufferedImage> FlowBorderlineVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height, int maxFlavours)
           
 HashMap<String,BufferedImage> SmoothedDataHistograms.getVisualizationFlavours(int variantIndex, GrowingSOM gsom, int width, int height, Map<String,String> flavourParameters)
           
 HashMap<String,BufferedImage> BackgroundImageVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height, Map<String,String> flavourParameters)
          Returns all visualisation flavours of the given variant just as BackgroundImageVisualizer.getVisualizationFlavours(int, GrowingSOM, int, int), but limiting the number of flavours by the given parameters.
 HashMap<String,BufferedImage> MetroMapVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height, Map<String,String> flavourParameters)
           
 HashMap<String,BufferedImage> ThematicClassMapVisualizer.getVisualizationFlavours(int variantIndex, GrowingSOM gsom, int width, int height, Map<String,String> flavourParameters)
           
 HashMap<String,BufferedImage> AbstractBackgroundImageVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height, Map<String,String> flavourParameters)
          Default implementation equal to AbstractBackgroundImageVisualizer.getVisualizationFlavours(int, GrowingSOM, int, int).
 HashMap<String,BufferedImage> RhythmPatternsAttributeVisualizer.getVisualizationFlavours(int variantIndex, GrowingSOM gsom, int width, int height, Map<String,String> flavourParameters)
           
 HashMap<String,BufferedImage> NeighbourhoodGraph.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height, Map<String,String> flavourParameters)
           
 HashMap<String,BufferedImage> ComponentPlanesVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height, Map<String,String> flavourParameters)
           
 HashMap<String,BufferedImage> ClusterConnectionsVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height, Map<String,String> flavourParameters)
           
 HashMap<String,BufferedImage> ActivityHistogram.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height, Map<String,String> flavourParameters)
           
 HashMap<String,BufferedImage> FlowBorderlineVisualizer.getVisualizationFlavours(int index, GrowingSOM gsom, int width, int height, Map<String,String> flavourParameters)
           
protected  void SmoothedDataHistograms.initSmoothingCache(GrowingSOM gsom)
           
private  void RhythmPatternsAttributeVisualizer.initVisualizationMatrices(GrowingSOM gsom, int width, int height)
           
static Palette Palette.loadPaletteFromXML(File file)
           
static Palette Palette.loadPaletteFromXML(JarFile jarFile, String name)
           
 void ColorGradient.setGradientPoint(double c, Color color)
           
private  void MetroMapVisualizer.MetroMapControlPanel.updateVis()
           
 

Constructors in at.tuwien.ifs.somtoolbox.visualization that throw SOMToolboxException
ColorGradient(double[] points, Color[] colors)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.visualization.clustering
 

Subclasses of SOMToolboxException in at.tuwien.ifs.somtoolbox.visualization.clustering
 class ClusteringAbortedException
          Is thrown when the user has aborted the running clustering algorithm.
 class MoreCentresThanKException
          In case anyone dares to set more centres for a K-Means guy -- that's what you're gonna get.
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.visualization.comparison
 

Methods in at.tuwien.ifs.somtoolbox.visualization.comparison that throw SOMToolboxException
 ArrayList<Shift> SOMComparison.calculateShifts(boolean cumulative)
           
 void SOMComparison.loadGSOMs(GrowingSOM gsom, String prefix)
           
 void SOMComparison.loadGSOMsFromPrefix(String prefix1, String prefix2)
           
 

Uses of SOMToolboxException in at.tuwien.ifs.somtoolbox.visualization.contourplot
 

Methods in at.tuwien.ifs.somtoolbox.visualization.contourplot that throw SOMToolboxException
private  void ContourPlot.AssignContourValues()
          interpolate between ContourPlot.zMin and ContourPlot.zMax, logarithmically or linearly, in order to assign contour values to the array ContourPlot.cv
private  void ContourPlot.GetExtremes()
          scans the data in ContourPlot.z in order to assign values to ContourPlot.zMin and ContourPlot.zMax
 void ContourPlot.setZedMatrix(cern.colt.matrix.DoubleMatrix2D zed)